Our publications appear in top peer-reviewed journals.

CAI2R scientists regularly publish findings and frequently present at scientific conferences.

Our research has led to numerous patents.

Below, we list 50 most recent papers coauthored by CAI2R scientists and indexed by PubMed.*

* PubMed is a database of biomedical and life sciences literature maintained by the National Center for Biotechnology Information (NCBI). Most-recently indexed publications may not include all of our latest publications. Citations may include extramural research supported by our Center’s founding award, P41EB017183. Some of our published research in the fields of electrical engineering, computer science, and artificial intelligence is not indexed by PubMed.

Anzai, Y, Moy, L.
Point-of-Care Low-Field-Strength MRI Is Moving Beyond the Hype.
Radiology. 2022; :221278. doi: 10.1148/radiol.221278.

Stern, N, Radunsky, D, Blumenfeld-Katzir, T, Chechik, Y, Solomon, C, Ben-Eliezer, N.
Mapping of MRI's T2 relaxation time at low SNR using Bloch simulations and principal component analysis image denoising.
NMR Biomed. 2022; :e4807. doi: 10.1002/nbm.4807.

Amer, R, Nassar, J, Trabelsi, A, Bendahan, D, Greenspan, H, Ben-Eliezer, N.
Quantification of Intra-Muscular Adipose Infiltration in Calf/Thigh MRI Using Fully and Weakly Supervised Semantic Segmentation.
Bioengineering (Basel). 2022;9 (7):. doi: 10.3390/bioengineering9070315.

Sharafi, A, Zibetti, MVW, Chang, G, Cloos, M, Regatte, RR.
3D magnetic resonance fingerprinting for rapid simultaneous T1, T2, and T1ρ volumetric mapping of human articular cartilage at 3 T.
NMR Biomed. 2022; :e4800. doi: 10.1002/nbm.4800.

Zibetti, MVW, Knoll, F, Regatte, RR.
Alternating Learning Approach for Variational Networks and Undersampling Pattern in Parallel MRI Applications.
IEEE Trans Comput Imaging. 2022;8 :449-461. doi: 10.1109/tci.2022.3176129.

Markus, I, Constantini, K, Goldstein, N, Amedi, R, Bornstein, Y, Stolkovsky, Y, Vidal, M, Lev-Ari, S, Balaban, R, Leibou, S, Blumenfeld-Katzir, T, Ben-Eliezer, N, Peled, D, Assaf, Y, Jensen, D, Constantini, N, Dubnov-Raz, G, Halperin, I, Gepner, Y.
Age Differences in Recovery Rate Following an Aerobic-Based Exercise Protocol Inducing Muscle Damage Among Amateur, Male Athletes.
Front Physiol. 2022;13 :916924. doi: 10.3389/fphys.2022.916924.

Bnaiahu, N, Omer, N, Wilczynski, E, Levy, S, Blumenfeld-Katzir, T, Ben-Eliezer, N.
Correcting for imaging gradients-related bias of T2 relaxation times at high-resolution MRI.
Magn Reson Med. 2022;88 (4):1806-1817. doi: 10.1002/mrm.29319.

Carluccio, G, Collins, CM.
High-permittivity pads to enhance SNR and transmit efficiency in MRI of the heart at 7T: a simulation study.
MAGMA. 2022; :. doi: 10.1007/s10334-022-01018-2.

Maffei, C, Girard, G, Schilling, KG, Aydogan, DB, Adluru, N, Zhylka, A, Wu, Y, Mancini, M, Hamamci, A, Sarica, A, Teillac, A, Baete, SH, Karimi, D, Yeh, FC, Yildiz, ME, Gholipour, A, Bihan-Poudec, Y, Hiba, B, Quattrone, A, Quattrone, A, Boshkovski, T, Stikov, N, Yap, PT, de Luca, A, Pluim, J, Leemans, A, Prabhakaran, V, Bendlin, BB, Alexander, AL, Landman, BA, Canales-Rodríguez, EJ, Barakovic, M, Rafael-Patino, J, Yu, T, Rensonnet, G, Schiavi, S, Daducci, A, Pizzolato, M, Fischi-Gomez, E, Thiran, JP, Dai, G, Grisot, G, Lazovski, N, Puch, S, Ramos, M, Rodrigues, P, Prčkovska, V, Jones, R, Lehman, J, Haber, SN, Yendiki, A.
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI.
Neuroimage. 2022;257 :119327. doi: 10.1016/j.neuroimage.2022.119327.

Bhatia, A, Lee, VK, Qian, Y, Paldino, MJ, Ceschin, R, Hect, J, Mountz, JM, Sun, D, Kohanbash, G, Pollack, IF, Jakacki, RI, Boada, F, Panigrahy, A.
Quantitative Sodium (23Na) MRI in Pediatric Gliomas: Initial Experience.
Diagnostics (Basel). 2022;12 (5):. doi: 10.3390/diagnostics12051223.

Schramm, G, Holler, M.
Fast and memory-efficient reconstruction of sparse Poisson data in listmode with non-smooth priors with application to time-of-flight PET.
Phys Med Biol. 2022;67 (15):. doi: 10.1088/1361-6560/ac71f1.

Chung, S, Chen, J, Li, T, Wang, Y, Lui, YW.
Investigating Brain White Matter in Football Players with and without Concussion Using a Biophysical Model from Multishell Diffusion MRI.
AJNR Am J Neuroradiol. 2022;43 (6):823-828. doi: 10.3174/ajnr.A7522.

Sun, Z, Jiang, D, Liu, P, Muccio, M, Li, C, Cao, Y, Wisniewski, TM, Lu, H, Ge, Y.
Age-Related Tortuosity of Carotid and Vertebral Arteries: Quantitative Evaluation With MR Angiography.
Front Neurol. 2022;13 :858805. doi: 10.3389/fneur.2022.858805.

Coelho, S, Baete, SH, Lemberskiy, G, Ades-Aron, B, Barrol, G, Veraart, J, Novikov, DS, Fieremans, E.
Reproducibility of the Standard Model of diffusion in white matter on clinical MRI systems.
Neuroimage. 2022;257 :119290. doi: 10.1016/j.neuroimage.2022.119290.

Jelescu, IO, de Skowronski, A, Geffroy, F, Palombo, M, Novikov, DS.
Neurite Exchange Imaging (NEXI): A minimal model of diffusion in gray matter with inter-compartment water exchange.
Neuroimage. 2022;256 :119277. doi: 10.1016/j.neuroimage.2022.119277.

Lo Gullo, R, Sevilimedu, V, Baltzer, P, Le Bihan, D, Camps-Herrero, J, Clauser, P, Gilbert, FJ, Iima, M, Mann, RM, Partridge, SC, Patterson, A, Sigmund, EE, Thakur, S, Thibault, FE, Martincich, L, Pinker, K, EUSOBI International Breast Diffusion-Weighted Imaging working group.
A survey by the European Society of Breast Imaging on the implementation of breast diffusion-weighted imaging in clinical practice.
Eur Radiol. 2022; :. doi: 10.1007/s00330-022-08833-0.

Makino, T, Jastrzębski, S, Oleszkiewicz, W, Chacko, C, Ehrenpreis, R, Samreen, N, Chhor, C, Kim, E, Lee, J, Pysarenko, K, Reig, B, Toth, H, Awal, D, Du, L, Kim, A, Park, J, Sodickson, DK, Heacock, L, Moy, L, Cho, K, Geras, KJ.
Differences between human and machine perception in medical diagnosis.
Sci Rep. 2022;12 (1):6877. doi: 10.1038/s41598-022-10526-z.

Fendrich, SJ, Koralnik, LR, Bonner, M, Goetz, D, Joe, P, Lee, J, Mueller, B, Robinson-Papp, J, Gonen, O, Clemente, JC, Malaspina, D.
Patient-reported exposures and outcomes link the gut-brain axis and inflammatory pathways to specific symptoms of severe mental illness.
Psychiatry Res. 2022;312 :114526. doi: 10.1016/j.psychres.2022.114526.

Block, KT.
Subtle pitfalls in the search for faster medical imaging.
Proc Natl Acad Sci U S A. 2022;119 (17):e2203040119. doi: 10.1073/pnas.2203040119.

Anania, V, Collier, Q, Veraart, J, Buikema, AE, Vanhevel, F, Billiet, T, Jeurissen, B, den Dekker, AJ, Sijbers, J.
Improved diffusion parameter estimation by incorporating T2 relaxation properties into the DKI-FWE model.
Neuroimage. 2022;256 :119219. doi: 10.1016/j.neuroimage.2022.119219.

Zhao, R, Yaman, B, Zhang, Y, Stewart, R, Dixon, A, Knoll, F, Huang, Z, Lui, YW, Hansen, MS, Lungren, MP.
fastMRI+, Clinical pathology annotations for knee and brain fully sampled magnetic resonance imaging data.
Sci Data. 2022;9 (1):152. doi: 10.1038/s41597-022-01255-z.

Zhang, X, Duchemin, Q, Liu, K, Gultekin, C, Flassbeck, S, Fernandez-Granda, C, Assländer, J.
Cramér-Rao bound-informed training of neural networks for quantitative MRI.
Magn Reson Med. 2022;88 (1):436-448. doi: 10.1002/mrm.29206.

Lee, CH, Walczak, P, Zhang, J.
Inhomogeneous magnetization transfer MRI of white matter structures in the hypomyelinated shiverer mouse brain.
Magn Reson Med. 2022;88 (1):332-340. doi: 10.1002/mrm.29207.

Lee, MD, Elsayed, M, Chopra, S, Lui, YW.
A No-Math Primer on the Principles of Machine Learning for Radiologists.
Semin Ultrasound CT MR. 2022;43 (2):133-141. doi: 10.1053/j.sult.2022.02.002.

Jaramillo, D, Duong, P, Nguyen, JC, Mostoufi-Moab, S, Nguyen, MK, Moreau, A, Barrera, CA, Hong, S, Raya, JG.
Diffusion Tensor Imaging of the Knee to Predict Childhood Growth.
Radiology. 2022;303 (3):655-663. doi: 10.1148/radiol.210484.

Khodarahmi, I, Brinkmann, IM, Lin, DJ, Bruno, M, Johnson, PM, Knoll, F, Keerthivasan, MB, Chandarana, H, Fritz, J.
New-Generation Low-Field Magnetic Resonance Imaging of Hip Arthroplasty Implants Using Slice Encoding for Metal Artifact Correction: First In Vitro Experience at 0.55 T and Comparison With 1.5 T.
Invest Radiol. 2022;57 (8):517-526. doi: 10.1097/RLI.0000000000000866.

Filipiak, P, Shepherd, T, Lin, YC, Placantonakis, DG, Boada, FE, Baete, SH.
Performance of orientation distribution function-fingerprinting with a biophysical multicompartment diffusion model.
Magn Reson Med. 2022;88 (1):418-435. doi: 10.1002/mrm.29208.

Wu, D, Richards, LJ, Zhao, Z, Cao, Z, Luo, W, Shao, W, Shi, SH, Miller, MI, Mori, S, Blackshaw, S, Zhang, J.
A diffusion MRI-based spatiotemporal continuum of the embryonic mouse brain for probing gene-neuroanatomy connections.
Proc Natl Acad Sci U S A. 2022;119 (7):. doi: 10.1073/pnas.2111869119.

Huang, L, Bai, J, Zong, R, Zhou, J, Zuo, Z, Chai, X, Wang, Z, An, J, Zhuo, Y, Boada, F, Yu, X, Ling, Z, Qu, B, Pan, L, Zhang, Z.
Sodium MRI at 7T for Early Response Evaluation of Intracranial Tumors following Stereotactic Radiotherapy Using the CyberKnife.
AJNR Am J Neuroradiol. 2022;43 (2):181-187. doi: 10.3174/ajnr.A7404.

Giannakopoulos, II, Guryev, GD, Serrallés, JEC, Georgakis, IP, Daniel, L, White, JK, Lattanzi, R.
Compression of volume-surface integral equation matrices via Tucker decomposition for magnetic resonance applications.
IEEE Trans Antennas Propag. 2022;70 (1):459-471. doi: 10.1109/TAP.2021.3090835.

Liang, Z, Lee, CH, Arefin, TM, Dong, Z, Walczak, P, Shi, SH, Knoll, F, Ge, Y, Ying, L, Zhang, J.
Virtual mouse brain histology from multi-contrast MRI via deep learning.
Elife. 2022;11 :. doi: 10.7554/eLife.72331.

Liu, K, Shen, Y, Wu, N, Chłędowski, J, Fernandez-Granda, C, Geras, KJ.
Weakly-supervised High-resolution Segmentation of Mammography Images for Breast Cancer Diagnosis.
Proc Mach Learn Res. 2021;143 :268-285.

Bharadwaj Das, A, Tranos, JA, Zhang, J, Zaim Wadghiri, Y, Kim, SG.
Estimation of Contrast Agent Concentration in DCE-MRI Using 2 Flip Angles.
Invest Radiol. 2022;57 (5):343-351. doi: 10.1097/RLI.0000000000000845.

Bae, J, Huang, Z, Knoll, F, Geras, K, Pandit Sood, T, Feng, L, Heacock, L, Moy, L, Kim, SG.
Estimation of the capillary level input function for dynamic contrast-enhanced MRI of the breast using a deep learning approach.
Magn Reson Med. 2022;87 (5):2536-2550. doi: 10.1002/mrm.29148.

Zhang, B, Wang, B, Ho, J, Hodono, S, Burke, C, Lattanzi, R, Vester, M, Rehner, R, Sodickson, D, Brown, R, Cloos, M.
Twenty-four-channel high-impedance glove array for hand and wrist MRI at 3T.
Magn Reson Med. 2022;87 (5):2566-2575. doi: 10.1002/mrm.29147.

Yu, Z, Hodono, S, Dergachyova, O, Hilbert, T, Wang, B, Zhang, B, Brown, R, Sodickson, DK, Madelin, G, Cloos, MA.
Simultaneous 3D acquisition of 1 H MRF and 23 Na MRI.
Magn Reson Med. 2022;87 (5):2299-2312. doi: 10.1002/mrm.29135.

Tax, CMW, Bastiani, M, Veraart, J, Garyfallidis, E, Okan Irfanoglu, M.
What's new and what's next in diffusion MRI preprocessing.
Neuroimage. 2022;249 :118830. doi: 10.1016/j.neuroimage.2021.118830.

Marzio, A, Kurz, E, Sahni, JM, Di Feo, G, Puccini, J, Jiang, S, Hirsch, CA, Arbini, AA, Wu, WL, Pass, HI, Bar-Sagi, D, Papagiannakopoulos, T, Pagano, M.
EMSY inhibits homologous recombination repair and the interferon response, promoting lung cancer immune evasion.
Cell. 2022;185 (1):169-183.e19. doi: 10.1016/j.cell.2021.12.005.

Omer, N, Galun, M, Stern, N, Blumenfeld-Katzir, T, Ben-Eliezer, N.
Data-driven algorithm for myelin water imaging: Probing subvoxel compartmentation based on identification of spatially global tissue features.
Magn Reson Med. 2022;87 (5):2521-2535. doi: 10.1002/mrm.29125.

Muccio, M, Chu, D, Minkoff, L, Kulkarni, N, Damadian, B, Damadian, RV, Ge, Y.
Upright versus supine MRI: effects of body position on craniocervical CSF flow.
Fluids Barriers CNS. 2021;18 (1):61. doi: 10.1186/s12987-021-00296-7.

Arefin, TM, Lee, CH, White, JD, Zhang, J, Kaffman, A.
Macroscopic Structural and Connectome Mapping of the Mouse Brain Using Diffusion Magnetic Resonance Imaging.
Bio Protoc. 2021;11 (22):e4221. doi: 10.21769/BioProtoc.4221.

Johnson, PM, Tong, A, Donthireddy, A, Melamud, K, Petrocelli, R, Smereka, P, Qian, K, Keerthivasan, MB, Chandarana, H, Knoll, F.
Deep Learning Reconstruction Enables Highly Accelerated Biparametric MR Imaging of the Prostate.
J Magn Reson Imaging. 2022;56 (1):184-195. doi: 10.1002/jmri.28024.

Ge, Y, Zivadinov, R, Wang, M, Charidimou, A, Haacke, EM.
Editorial: Update on Vascular Contributions to Age-Related Neurodegenerative Diseases and Cognitive Impairment - Research of ISNVD 2020 Meeting.
Front Neurol. 2021;12 :797486. doi: 10.3389/fneur.2021.797486.

Sharafi, A, Zibetti, MVW, Chang, G, Cloos, MA, Regatte, RR.
Simultaneous bilateral T1 , T2 , and T relaxation mapping of the hip joint with magnetic resonance fingerprinting.
NMR Biomed. 2022;35 (5):e4651. doi: 10.1002/nbm.4651.

Assländer, J, Gultekin, C, Flassbeck, S, Glaser, SJ, Sodickson, DK.
Generalized Bloch model: A theory for pulsed magnetization transfer.
Magn Reson Med. 2022;87 (4):2003-2017. doi: 10.1002/mrm.29071.

Chandarana, H, Pisuchpen, N, Krieger, R, Dane, B, Mikheev, A, Feng, Y, Kambadakone, A, Rusinek, H.
Association of body composition parameters measured on CT with risk of hospitalization in patients with Covid-19.
Eur J Radiol. 2021;145 :110031. doi: 10.1016/j.ejrad.2021.110031.

Ruiz, A, Duarte, A, Bravo, D, Ramos Gavilá, E, Zhang, C, Cowman, MK, Kirsch, T, Milne, M, Luyt, LG, Raya, JG.
In vivo multimodal imaging of hyaluronan-mediated inflammatory response in articular cartilage.
Osteoarthritis Cartilage. 2022;30 (2):329-340. doi: 10.1016/j.joca.2021.11.006.

van Oostenbrugge, TJ, Spenkelink, IM, Bokacheva, L, Rusinek, H, van Amerongen, MJ, Langenhuijsen, JF, Mulders, PFA, Fütterer, JJ.
Kidney tumor diffusion-weighted magnetic resonance imaging derived ADC histogram parameters combined with patient characteristics and tumor volume to discriminate oncocytoma from renal cell carcinoma.
Eur J Radiol. 2021;145 :110013. doi: 10.1016/j.ejrad.2021.110013.

Zibetti, MVW, Sharafi, A, Regatte, RR.
Optimization of spin-lock times in T mapping of knee cartilage: Cramér-Rao bounds versus matched sampling-fitting.
Magn Reson Med. 2022;87 (3):1418-1434. doi: 10.1002/mrm.29063.

Wu, N, Huang, Z, Shen, Y, Park, J, Phang, J, Makino, T, Gene Kim, S, Cho, K, Heacock, L, Moy, L, Geras, KJ.
Reducing False-Positive Biopsies using Deep Neural Networks that Utilize both Local and Global Image Context of Screening Mammograms.
J Digit Imaging. 2021;34 (6):1414-1423. doi: 10.1007/s10278-021-00530-6.

Radiology Research Publications

A comprehensive list of radiology research publications coauthored by NYU Langone scientists is available on our department’s website.