Our publications appear in top peer-reviewed journals.

CAI2R scientists regularly publish findings and frequently present at scientific conferences.

Our research has led to numerous patents.

Below, we list 50 most recent papers coauthored by CAI2R scientists and indexed by PubMed.*

* PubMed is a database of biomedical and life sciences literature maintained by the National Center for Biotechnology Information (NCBI). Most-recently indexed publications may not include all of our latest publications. Citations may include extramural research supported by our Center’s founding award, P41EB017183. Some of our published research in the fields of electrical engineering, computer science, and artificial intelligence is not indexed by PubMed.

Makino, T, Jastrzębski, S, Oleszkiewicz, W, Chacko, C, Ehrenpreis, R, Samreen, N, Chhor, C, Kim, E, Lee, J, Pysarenko, K, Reig, B, Toth, H, Awal, D, Du, L, Kim, A, Park, J, Sodickson, DK, Heacock, L, Moy, L, Cho, K, Geras, KJ.
Differences between human and machine perception in medical diagnosis.
Sci Rep. 2022;12 (1):6877. doi: 10.1038/s41598-022-10526-z.

Fendrich, SJ, Koralnik, LR, Bonner, M, Goetz, D, Joe, P, Lee, J, Mueller, B, Robinson-Papp, J, Gonen, O, Clemente, JC, Malaspina, D.
Patient-reported exposures and outcomes link the gut-brain axis and inflammatory pathways to specific symptoms of severe mental illness.
Psychiatry Res. 2022;312 :114526. doi: 10.1016/j.psychres.2022.114526.

Block, KT.
Subtle pitfalls in the search for faster medical imaging.
Proc Natl Acad Sci U S A. 2022;119 (17):e2203040119. doi: 10.1073/pnas.2203040119.

Zhang, X, Duchemin, Q, Liu, K, Gultekin, C, Flassbeck, S, Fernandez-Granda, C, Assländer, J.
Cramér-Rao bound-informed training of neural networks for quantitative MRI.
Magn Reson Med. 2022;88 (1):436-448. doi: 10.1002/mrm.29206.

Filipiak, P, Shepherd, T, Lin, YC, Placantonakis, DG, Boada, FE, Baete, SH.
Performance of orientation distribution function-fingerprinting with a biophysical multicompartment diffusion model.
Magn Reson Med. 2022;88 (1):418-435. doi: 10.1002/mrm.29208.

Huang, L, Bai, J, Zong, R, Zhou, J, Zuo, Z, Chai, X, Wang, Z, An, J, Zhuo, Y, Boada, F, Yu, X, Ling, Z, Qu, B, Pan, L, Zhang, Z.
Sodium MRI at 7T for Early Response Evaluation of Intracranial Tumors following Stereotactic Radiotherapy Using the CyberKnife.
AJNR Am J Neuroradiol. 2022;43 (2):181-187. doi: 10.3174/ajnr.A7404.

Giannakopoulos, II, Guryev, GD, Serrallés, JEC, Georgakis, IP, Daniel, L, White, JK, Lattanzi, R.
Compression of volume-surface integral equation matrices via Tucker decomposition for magnetic resonance applications.
IEEE Trans Antennas Propag. 2022;70 (1):459-471. doi: 10.1109/TAP.2021.3090835.

Liu, K, Shen, Y, Wu, N, Chłędowski, J, Fernandez-Granda, C, Geras, KJ.
Weakly-supervised High-resolution Segmentation of Mammography Images for Breast Cancer Diagnosis.
Proc Mach Learn Res. 2021;143 :268-285.

Bharadwaj Das, A, Tranos, JA, Zhang, J, Zaim Wadghiri, Y, Kim, SG.
Estimation of Contrast Agent Concentration in DCE-MRI Using 2 Flip Angles.
Invest Radiol. 2022;57 (5):343-351. doi: 10.1097/RLI.0000000000000845.

Bae, J, Huang, Z, Knoll, F, Geras, K, Pandit Sood, T, Feng, L, Heacock, L, Moy, L, Kim, SG.
Estimation of the capillary level input function for dynamic contrast-enhanced MRI of the breast using a deep learning approach.
Magn Reson Med. 2022;87 (5):2536-2550. doi: 10.1002/mrm.29148.

Zhang, B, Wang, B, Ho, J, Hodono, S, Burke, C, Lattanzi, R, Vester, M, Rehner, R, Sodickson, D, Brown, R, Cloos, M.
Twenty-four-channel high-impedance glove array for hand and wrist MRI at 3T.
Magn Reson Med. 2022;87 (5):2566-2575. doi: 10.1002/mrm.29147.

Yu, Z, Hodono, S, Dergachyova, O, Hilbert, T, Wang, B, Zhang, B, Brown, R, Sodickson, DK, Madelin, G, Cloos, MA.
Simultaneous 3D acquisition of 1 H MRF and 23 Na MRI.
Magn Reson Med. 2022;87 (5):2299-2312. doi: 10.1002/mrm.29135.

Tax, CMW, Bastiani, M, Veraart, J, Garyfallidis, E, Okan Irfanoglu, M.
What's new and what's next in diffusion MRI preprocessing.
Neuroimage. 2022;249 :118830. doi: 10.1016/j.neuroimage.2021.118830.

Marzio, A, Kurz, E, Sahni, JM, Di Feo, G, Puccini, J, Jiang, S, Hirsch, CA, Arbini, AA, Wu, WL, Pass, HI, Bar-Sagi, D, Papagiannakopoulos, T, Pagano, M.
EMSY inhibits homologous recombination repair and the interferon response, promoting lung cancer immune evasion.
Cell. 2022;185 (1):169-183.e19. doi: 10.1016/j.cell.2021.12.005.

Omer, N, Galun, M, Stern, N, Blumenfeld-Katzir, T, Ben-Eliezer, N.
Data-driven algorithm for myelin water imaging: Probing subvoxel compartmentation based on identification of spatially global tissue features.
Magn Reson Med. 2022;87 (5):2521-2535. doi: 10.1002/mrm.29125.

Johnson, PM, Tong, A, Donthireddy, A, Melamud, K, Petrocelli, R, Smereka, P, Qian, K, Keerthivasan, MB, Chandarana, H, Knoll, F.
Deep Learning Reconstruction Enables Highly Accelerated Biparametric MR Imaging of the Prostate.
J Magn Reson Imaging. 2021; :. doi: 10.1002/jmri.28024.

Sharafi, A, Zibetti, MVW, Chang, G, Cloos, MA, Regatte, RR.
Simultaneous bilateral T1 , T2 , and T relaxation mapping of the hip joint with magnetic resonance fingerprinting.
NMR Biomed. 2022;35 (5):e4651. doi: 10.1002/nbm.4651.

Assländer, J, Gultekin, C, Flassbeck, S, Glaser, SJ, Sodickson, DK.
Generalized Bloch model: A theory for pulsed magnetization transfer.
Magn Reson Med. 2022;87 (4):2003-2017. doi: 10.1002/mrm.29071.

Chandarana, H, Pisuchpen, N, Krieger, R, Dane, B, Mikheev, A, Feng, Y, Kambadakone, A, Rusinek, H.
Association of body composition parameters measured on CT with risk of hospitalization in patients with Covid-19.
Eur J Radiol. 2021;145 :110031. doi: 10.1016/j.ejrad.2021.110031.

Ruiz, A, Duarte, A, Bravo, D, Ramos Gavilá, E, Zhang, C, Cowman, MK, Kirsch, T, Milne, M, Luyt, LG, Raya, JG.
In vivo multimodal imaging of hyaluronan-mediated inflammatory response in articular cartilage.
Osteoarthritis Cartilage. 2022;30 (2):329-340. doi: 10.1016/j.joca.2021.11.006.

van Oostenbrugge, TJ, Spenkelink, IM, Bokacheva, L, Rusinek, H, van Amerongen, MJ, Langenhuijsen, JF, Mulders, PFA, Fütterer, JJ.
Kidney tumor diffusion-weighted magnetic resonance imaging derived ADC histogram parameters combined with patient characteristics and tumor volume to discriminate oncocytoma from renal cell carcinoma.
Eur J Radiol. 2021;145 :110013. doi: 10.1016/j.ejrad.2021.110013.

Zibetti, MVW, Sharafi, A, Regatte, RR.
Optimization of spin-lock times in T mapping of knee cartilage: Cramér-Rao bounds versus matched sampling-fitting.
Magn Reson Med. 2022;87 (3):1418-1434. doi: 10.1002/mrm.29063.

Wu, N, Huang, Z, Shen, Y, Park, J, Phang, J, Makino, T, Gene Kim, S, Cho, K, Heacock, L, Moy, L, Geras, KJ.
Reducing False-Positive Biopsies using Deep Neural Networks that Utilize both Local and Global Image Context of Screening Mammograms.
J Digit Imaging. 2021;34 (6):1414-1423. doi: 10.1007/s10278-021-00530-6.

Wake, N, Rosenkrantz, AB, Huang, WC, Wysock, JS, Taneja, SS, Sodickson, DK, Chandarana, H.
A workflow to generate patient-specific three-dimensional augmented reality models from medical imaging data and example applications in urologic oncology.
3D Print Med. 2021;7 (1):34. doi: 10.1186/s41205-021-00125-5.

Zibetti, MVW, Herman, GT, Regatte, RR.
Fast data-driven learning of parallel MRI sampling patterns for large scale problems.
Sci Rep. 2021;11 (1):19312. doi: 10.1038/s41598-021-97995-w.

Shen, Y, Shamout, FE, Oliver, JR, Witowski, J, Kannan, K, Park, J, Wu, N, Huddleston, C, Wolfson, S, Millet, A, Ehrenpreis, R, Awal, D, Tyma, C, Samreen, N, Gao, Y, Chhor, C, Gandhi, S, Lee, C, Kumari-Subaiya, S, Leonard, C, Mohammed, R, Moczulski, C, Altabet, J, Babb, J, Lewin, A, Reig, B, Moy, L, Heacock, L, Geras, KJ.
Artificial intelligence system reduces false-positive findings in the interpretation of breast ultrasound exams.
Nat Commun. 2021;12 (1):5645. doi: 10.1038/s41467-021-26023-2.

Vergara, M, Rezaei, A, Schramm, G, Rodriguez-Alvarez, MJ, Benlloch Baviera, JM, Nuyts, J.
2D feasibility study of joint reconstruction of attenuation and activity in limited angle TOF-PET.
IEEE Trans Radiat Plasma Med Sci. 2021;5 (5):712-722. doi: 10.1109/trpms.2021.3079462.

Brown, R, Sharafi, A, Slade, JM, Convit, A, Davis, N, Baete, S, Milton, H, Mroczek, KJ, Kluding, PM, Regatte, RR, Parasoglou, P, Rao, S.
Lower extremity MRI following 10-week supervised exercise intervention in patients with diabetic peripheral neuropathy.
BMJ Open Diabetes Res Care. 2021;9 (1):. doi: 10.1136/bmjdrc-2021-002312.

Narnhofer, D, Effland, A, Kobler, E, Hammernik, K, Knoll, F, Pock, T.
Bayesian Uncertainty Estimation of Learned Variational MRI Reconstruction.
IEEE Trans Med Imaging. 2022;41 (2):279-291. doi: 10.1109/TMI.2021.3112040.

Wang, B, Zhang, B, Yu, Z, Ianniello, C, Lakshmanan, K, Paska, J, Madelin, G, Cloos, M, Brown, R.
A radially interleaved sodium and proton coil array for brain MRI at 7 T.
NMR Biomed. 2021;34 (12):e4608. doi: 10.1002/nbm.4608.

Huang, SY, Witzel, T, Keil, B, Scholz, A, Davids, M, Dietz, P, Rummert, E, Ramb, R, Kirsch, JE, Yendiki, A, Fan, Q, Tian, Q, Ramos-Llordén, G, Lee, HH, Nummenmaa, A, Bilgic, B, Setsompop, K, Wang, F, Avram, AV, Komlosh, M, Benjamini, D, Magdoom, KN, Pathak, S, Schneider, W, Novikov, DS, Fieremans, E, Tounekti, S, Mekkaoui, C, Augustinack, J, Berger, D, Shapson-Coe, A, Lichtman, J, Basser, PJ, Wald, LL, Rosen, BR.
Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome.
Neuroimage. 2021;243 :118530. doi: 10.1016/j.neuroimage.2021.118530.

Siolas, D, Vucic, E, Kurz, E, Hajdu, C, Bar-Sagi, D.
Gain-of-function p53R172H mutation drives accumulation of neutrophils in pancreatic tumors, promoting resistance to immunotherapy.
Cell Rep. 2021;36 (8):109578. doi: 10.1016/j.celrep.2021.109578.

Chandarana, H, Bagga, B, Huang, C, Dane, B, Petrocelli, R, Bruno, M, Keerthivasan, M, Grodzki, D, Block, KT, Stoffel, D, Sodickson, DK.
Diagnostic abdominal MR imaging on a prototype low-field 0.55 T scanner operating at two different gradient strengths.
Abdom Radiol (NY). 2021;46 (12):5772-5780. doi: 10.1007/s00261-021-03234-1.

Gerhalter, T, Cloos, M, Chen, AM, Dehkharghani, S, Peralta, R, Babb, JS, Zarate, A, Bushnik, T, Silver, JM, Im, BS, Wall, S, Baete, S, Madelin, G, Kirov, II.
T1 and T2 quantification using magnetic resonance fingerprinting in mild traumatic brain injury.
Eur Radiol. 2022;32 (2):1308-1319. doi: 10.1007/s00330-021-08235-8.

van Aalst, J, Devrome, M, Van Weehaeghe, D, Rezaei, A, Radwan, A, Schramm, G, Ceccarini, J, Sunaert, S, Koole, M, Van Laere, K.
Regional glucose metabolic decreases with ageing are associated with microstructural white matter changes: a simultaneous PET/MR study.
Eur J Nucl Med Mol Imaging. 2022;49 (2):664-680. doi: 10.1007/s00259-021-05518-6.

Carcea, I, Caraballo, NL, Marlin, BJ, Ooyama, R, Riceberg, JS, Mendoza Navarro, JM, Opendak, M, Diaz, VE, Schuster, L, Alvarado Torres, MI, Lethin, H, Ramos, D, Minder, J, Mendoza, SL, Bair-Marshall, CJ, Samadjopoulos, GH, Hidema, S, Falkner, A, Lin, D, Mar, A, Wadghiri, YZ, Nishimori, K, Kikusui, T, Mogi, K, Sullivan, RM, Froemke, RC.
Oxytocin neurons enable social transmission of maternal behaviour.
Nature. 2021;596 (7873):553-557. doi: 10.1038/s41586-021-03814-7.

Veerappan, A, Oskuei, A, Crowley, G, Mikhail, M, Ostrofsky, D, Gironda, Z, Vaidyanathan, S, Wadghiri, YZ, Liu, M, Kwon, S, Nolan, A.
Author Correction: World Trade Center-Cardiorespiratory and Vascular Dysfunction: Assessing the Phenotype and Metabolome of a Murine Particulate Matter Exposure Model.
Sci Rep. 2021;11 (1):16303. doi: 10.1038/s41598-021-95856-0.

Glessgen, CG, Breit, HC, Block, TK, Merkle, EM, Heye, T, Boll, DT.
Respiratory anomalies associated with gadoxetate disodium and gadoterate meglumine: compressed sensing MRI revealing physiologic phenomena during the entire injection cycle.
Eur Radiol. 2022;32 (1):346-354. doi: 10.1007/s00330-021-08114-2.

Schmidt, S, Bruschewski, M, Flassbeck, S, John, K, Grundmann, S, Ladd, ME, Schmitter, S.
Phase-contrast acceleration mapping with synchronized encoding.
Magn Reson Med. 2021;86 (6):3201-3210. doi: 10.1002/mrm.28948.

Catana, C, Laforest, R, An, H, Boada, F, Cao, T, Faul, D, Jakoby, B, Jansen, FP, Kemp, BJ, Kinahan, PE, Larson, P, Levine, MA, Maniawski, P, Mawlawi, O, McConathy, JE, McMillan, AB, Price, JC, Rajagopal, A, Sunderland, J, Veit-Haibach, P, Wangerin, KA, Ying, C, Hope, TA.
A Path to Qualification of PET/MRI Scanners for Multicenter Brain Imaging Studies: Evaluation of MRI-Based Attenuation Correction Methods Using a Patient Phantom.
J Nucl Med. 2022;63 (4):615-621. doi: 10.2967/jnumed.120.261881.

Gandji, NP, Sica, CT, Lanagan, MT, Woo, MK, DelaBarre, L, Radder, J, Zhang, B, Lattanzi, R, Adriany, G, Ugurbil, K, Yang, QX.
Displacement current distribution on a high dielectric constant helmet and its effect on RF field at 10.5 T (447 MHz).
Magn Reson Med. 2021;86 (6):3292-3303. doi: 10.1002/mrm.28923.

Menon, RG, Raghavan, P, Regatte, RR.
Pilot study quantifying muscle glycosaminoglycan using bi-exponential T mapping in patients with muscle stiffness after stroke.
Sci Rep. 2021;11 (1):13951. doi: 10.1038/s41598-021-93304-7.

Lee, HH, Novikov, DS, Fieremans, E.
Removal of partial Fourier-induced Gibbs (RPG) ringing artifacts in MRI.
Magn Reson Med. 2021;86 (5):2733-2750. doi: 10.1002/mrm.28830.

Montin, E, Lattanzi, R.
Seeking a Widely Adoptable Practical Standard to Estimate Signal-to-Noise Ratio in Magnetic Resonance Imaging for Multiple-Coil Reconstructions.
J Magn Reson Imaging. 2021;54 (6):1952-1964. doi: 10.1002/jmri.27816.

Wu, N, Jastrzębski, S, Park, J, Moy, L, Cho, K, Geras, KJ.
Improving the Ability of Deep Neural Networks to Use Information from Multiple Views in Breast Cancer Screening.
Proc Mach Learn Res. 2020;121 :827-842.

Chechik, Y, Beit Ner, E, Lysyy, O, Tal, S, Stern, N, Agar, G, Beer, Y, Ben-Eliezer, N, Lindner, D.
Post-Run T2 Mapping Changes in Knees of Adolescent Basketball Players.
Cartilage. 2021;13 (1_suppl):707S-717S. doi: 10.1177/19476035211021891.

Yoon, JH, Lee, JM, Yu, MH, Hur, BY, Grimm, R, Sourbron, S, Chandarana, H, Son, Y, Basak, S, Lee, KB, Yi, NJ, Lee, KW, Suh, KS.
Simultaneous evaluation of perfusion and morphology using GRASP MRI in hepatic fibrosis.
Eur Radiol. 2022;32 (1):34-45. doi: 10.1007/s00330-021-08087-2.

Ruello, G, Lattanzi, R.
Scattering from Spheres: A New Look into an Old Problem.
Electronics (Basel). 2021;10 (2):. doi: 10.3390/electronics10020216.

Kratzer, FJ, Flassbeck, S, Schmitter, S, Wilferth, T, Magill, AW, Knowles, BR, Platt, T, Bachert, P, Ladd, ME, Nagel, AM.
3D sodium (23 Na) magnetic resonance fingerprinting for time-efficient relaxometric mapping.
Magn Reson Med. 2021;86 (5):2412-2425. doi: 10.1002/mrm.28873.

Talanki, VR, Peng, Q, Shamir, SB, Baete, SH, Duong, TQ, Wake, N.
Three-Dimensional Printed Anatomic Models Derived From Magnetic Resonance Imaging Data: Current State and Image Acquisition Recommendations for Appropriate Clinical Scenarios.
J Magn Reson Imaging. 2022;55 (4):1060-1081. doi: 10.1002/jmri.27744.

Radiology Research Publications

A comprehensive list of radiology research publications coauthored by NYU Langone scientists is available on our department’s website.