Below, we list 50 most recent papers coauthored by CAI²R scientists and indexed by PubMed.*

* PubMed is a database of biomedical and life sciences literature maintained by the National Center for Biotechnology Information (NCBI). Most-recently indexed publications may not include all of our latest publications. Citations may include extramural research supported by our Center’s founding award, P41EB017183. Some of our published research in the fields of electrical engineering, computer science, and artificial intelligence is not indexed by PubMed.

Tolpadi, AA, Bharadwaj, U, Gao, KT, Bhattacharjee, R, Gassert, FG, Luitjens, J, Giesler, P, Morshuis, JN, Fischer, P, Hein, M, Baumgartner, CF, Razumov, A, Dylov, D, Lohuizen, QV, Fransen, SJ, Zhang, X, Tibrewala, R, de Moura, HL, Liu, K, Zibetti, MVW, Regatte, R, Majumdar, S, Pedoia, V.
K2S Challenge: From Undersampled K-Space to Automatic Segmentation.
Bioengineering (Basel). 2023;10 (2):. doi: 10.3390/bioengineering10020267.

Kiser, K, Zhang, J, Das, AB, Tranos, JA, Wadghiri, YZ, Kim, SG.
Evaluation of cellular water exchange in a mouse glioma model using dynamic contrast-enhanced MRI with two flip angles.
Sci Rep. 2023;13 (1):3007. doi: 10.1038/s41598-023-29991-1.

Wake, N, Rosenkrantz, AB, Huang, R, Ginocchio, LA, Wysock, JS, Taneja, SS, Huang, WC, Chandarana, H.
Impact of 3D printed models on quantitative surgical outcomes for patients undergoing robotic-assisted radical prostatectomy: a cohort study.
Abdom Radiol (NY). 2023; :. doi: 10.1007/s00261-023-03815-2.

Acciavatti, RJ, Lee, SH, Reig, B, Moy, L, Conant, EF, Kontos, D, Moon, WK.
Beyond Breast Density: Risk Measures for Breast Cancer in Multiple Imaging Modalities.
Radiology. 2023;306 (3):e222575. doi: 10.1148/radiol.222575.

Chen, AM, Gerhalter, T, Dehkharghani, S, Peralta, R, Gajdošík, M, Gajdošík, M, Tordjman, M, Zabludovsky, J, Sheriff, S, Ahn, S, Babb, JS, Bushnik, T, Zarate, A, Silver, JM, Im, BS, Wall, SP, Madelin, G, Kirov, II.
Replicability of proton MR spectroscopic imaging findings in mild traumatic brain injury: Implications for clinical applications.
Neuroimage Clin. 2023;37 :103325. doi: 10.1016/j.nicl.2023.103325.

Tranos, JA, Das, A, Zhang, J, Hafeez, S, Arvanitakis, GN, Thomson, SAJ, Khan, S, Pandya, N, Kim, SG, Wadghiri, YZ.
Rapid In Vitro Quantification of a Sensitized Gadolinium Chelate via Photoinduced Triplet Harvesting.
ACS Omega. 2023;8 (3):2907-2914. doi: 10.1021/acsomega.2c05040.

Filipiak, P, Shepherd, T, Basler, L, Zuccolotto, A, Placantonakis, DG, Schneider, W, Boada, FE, Baete, SH.
Stepwise Stochastic Dictionary Adaptation Improves Microstructure Reconstruction with Orientation Distribution Function Fingerprinting.
CDMRI Workshop (2022). 2022;13722 :89-100. doi: 10.1007/978-3-031-21206-2_8.

Harris, AD, Amiri, H, Bento, M, Cohen, R, Ching, CRK, Cudalbu, C, Dennis, EL, Doose, A, Ehrlich, S, Kirov, II, Mekle, R, Oeltzschner, G, Porges, E, Souza, R, Tam, FI, Taylor, B, Thompson, PM, Quidé, Y, Wilde, EA, Williamson, J, Lin, AP, Bartnik-Olson, B.
Harmonization of multi-scanner in vivo magnetic resonance spectroscopy: ENIGMA consortium task group considerations.
Front Neurol. 2022;13 :1045678. doi: 10.3389/fneur.2022.1045678.

Daniel, G, Meirav, G, Noam, O, Tamar, BK, Dvir, R, Ricardo, O, Noam, BE.
Fast and accurate T₂ mapping using Bloch simulations and low-rank plus sparse matrix decomposition.
Magn Reson Imaging. 2023;98 :66-75. doi: 10.1016/j.mri.2023.01.007.

Chubak, I, Alon, L, Silletta, EV, Madelin, G, Jerschow, A, Rotenberg, B.
Quadrupolar ²³Na⁺ NMR relaxation as a probe of subpicosecond collective dynamics in aqueous electrolyte solutions.
Nat Commun. 2023;14 (1):84. doi: 10.1038/s41467-022-35695-3.

Li, Z, Huang, C, Tong, A, Chandarana, H, Feng, L.
Kz-accelerated variable-density stack-of-stars MRI.
Magn Reson Imaging. 2023;97 :56-67. doi: 10.1016/j.mri.2022.12.017.

Nykänen, O, Nevalainen, M, Casula, V, Isosalo, A, Inkinen, SI, Nikki, M, Lattanzi, R, Cloos, MA, Nissi, MJ, Nieminen, MT.
Deep-Learning-Based Contrast Synthesis From MRF Parameter Maps in the Knee Joint.
J Magn Reson Imaging. 2022; :. doi: 10.1002/jmri.28573.

Glennon, E, Valtcheva, S, Zhu, A, Wadghiri, YZ, Svirsky, MA, Froemke, RC.
Locus coeruleus activity improves cochlear implant performance.
Nature. 2023;613 (7943):317-323. doi: 10.1038/s41586-022-05554-8.

Parasoglou, P, Osorio, RS, Khegai, O, Kovbasyuk, Z, Miller, M, Ho, A, Dehkharghani, S, Wisniewski, T, Convit, A, Mosconi, L, Brown, R.
Phosphorus metabolism in the brain of cognitively normal midlife individuals at risk for Alzheimer's disease.
Neuroimage Rep. 2022;2 (4):. doi: 10.1016/j.ynirp.2022.100121.

Solomon, C, Shmueli, O, Shrot, S, Blumenfeld-Katzir, T, Radunsky, D, Omer, N, Stern, N, Reichman, DB, Hoffmann, C, Salti, M, Greenspan, H, Ben-Eliezer, N.
Psychophysical Evaluation of Visual vs. Computer-Aided Detection of Brain Lesions on Magnetic Resonance Images.
J Magn Reson Imaging. 2022; :. doi: 10.1002/jmri.28559.

Wichtmann, BD, Fan, Q, Eskandarian, L, Witzel, T, Attenberger, UI, Pieper, CC, Schad, L, Rosen, BR, Wald, LL, Huang, SY, Nummenmaa, A.
Linear multi-scale modeling of diffusion MRI data: A framework for characterization of oriented structures across length scales.
Hum Brain Mapp. 2023;44 (4):1496-1514. doi: 10.1002/hbm.26143.

Li, C, Fieremans, E, Novikov, DS, Ge, Y, Zhang, J.
Measuring water exchange on a preclinical MRI system using filter exchange and diffusion time dependent kurtosis imaging.
Magn Reson Med. 2023;89 (4):1441-1455. doi: 10.1002/mrm.29536.

Feng, L.
4D Golden-Angle Radial MRI at Subsecond Temporal Resolution.
NMR Biomed. 2023;36 (2):e4844. doi: 10.1002/nbm.4844.

de Moura, HL, Menon, RG, Zibetti, MVW, Regatte, RR.
Optimization of spin-lock times for T_1ρ mapping of human knee cartilage with bi- and stretched-exponential models.
Sci Rep. 2022;12 (1):16829. doi: 10.1038/s41598-022-21269-2.

Kijowski, R, Sharafi, A, Zibetti, MVW, Chang, G, Cloos, MA, Regatte, RR.
Age-Dependent Changes in Knee Cartilage T₁ , T₂ , and T_1p Simultaneously Measured Using MRI Fingerprinting.
J Magn Reson Imaging. 2022; :. doi: 10.1002/jmri.28451.

Witowski, J, Heacock, L, Reig, B, Kang, SK, Lewin, A, Pysarenko, K, Patel, S, Samreen, N, Rudnicki, W, Łuczyńska, E, Popiela, T, Moy, L, Geras, KJ.
Improving breast cancer diagnostics with deep learning for MRI.
Sci Transl Med. 2022;14 (664):eabo4802. doi: 10.1126/scitranslmed.abo4802.

Gao, Y, Moy, L.
Phase-Sensitive Breast Tomosynthesis May Address Shortcomings of Digital Breast Tomosynthesis.
Radiology. 2023;306 (2):e222184. doi: 10.1148/radiol.222184.

Oluwadare, J, Cabodevilla, AG, Son, NH, Hu, Y, Mullick, AE, Verano, M, Alemán, JO, Ramasamy, R, Goldberg, IJ.
Blocking Lipid Uptake Pathways Does not Prevent Toxicity in Adipose Triglyceride Lipase (ATGL) Deficiency.
J Lipid Res. 2022;63 (11):100274. doi: 10.1016/j.jlr.2022.100274.

Vaidya, MV, Zhang, B, Hong, D, Brown, R, Batsios, G, Viswanath, P, Paska, J, Wulf, G, Grant, AK, Ronen, SM, Larson, PEZ.
A ¹³C/³¹P surface coil to visualize metabolism and energetics in the rodent brain at 3 Tesla.
J Magn Reson. 2022;343 :107286. doi: 10.1016/j.jmr.2022.107286.

Wang, B, Siddiq, SS, Walczyk, J, Bruno, M, Khodarahmi, I, Brinkmann, IM, Rehner, R, Lakshmanan, K, Fritz, J, Brown, R.
A flexible MRI coil based on a cable conductor and applied to knee imaging.
Sci Rep. 2022;12 (1):15010. doi: 10.1038/s41598-022-19282-6.

Cheng, LK, Chiu, YH, Lin, YC, Li, WC, Hong, TY, Yang, CJ, Shih, CH, Yeh, TC, Tseng, WI, Yu, HY, Hsieh, JC, Chen, LF.
Long-term musical training induces white matter plasticity in emotion and language networks.
Hum Brain Mapp. 2023;44 (1):5-17. doi: 10.1002/hbm.26054.

Rodriguez, GG, Yu, Z, O Donnell, LF, Calderon, L, Cloos, MA, Madelin, G.
Repeatability of simultaneous 3D ¹H MRF/²³Na MRI in brain at 7 T.
Sci Rep. 2022;12 (1):14156. doi: 10.1038/s41598-022-18388-1.

Anzai, Y, Moy, L.
Point-of-Care Low-Field-Strength MRI Is Moving Beyond the Hype.
Radiology. 2022;305 (3):672-673. doi: 10.1148/radiol.221278.

Stern, N, Radunsky, D, Blumenfeld-Katzir, T, Chechik, Y, Solomon, C, Ben-Eliezer, N.
Mapping of magnetic resonance imaging's transverse relaxation time at low signal-to-noise ratio using Bloch simulations and principal component analysis image denoising.
NMR Biomed. 2022;35 (12):e4807. doi: 10.1002/nbm.4807.

Amer, R, Nassar, J, Trabelsi, A, Bendahan, D, Greenspan, H, Ben-Eliezer, N.
Quantification of Intra-Muscular Adipose Infiltration in Calf/Thigh MRI Using Fully and Weakly Supervised Semantic Segmentation.
Bioengineering (Basel). 2022;9 (7):. doi: 10.3390/bioengineering9070315.

Sharafi, A, Zibetti, MVW, Chang, G, Cloos, M, Regatte, RR.
3D magnetic resonance fingerprinting for rapid simultaneous T1, T2, and T1ρ volumetric mapping of human articular cartilage at 3 T.
NMR Biomed. 2022;35 (12):e4800. doi: 10.1002/nbm.4800.

Zibetti, MVW, Knoll, F, Regatte, RR.
Alternating Learning Approach for Variational Networks and Undersampling Pattern in Parallel MRI Applications.
IEEE Trans Comput Imaging. 2022;8 :449-461. doi: 10.1109/tci.2022.3176129.

Markus, I, Constantini, K, Goldstein, N, Amedi, R, Bornstein, Y, Stolkovsky, Y, Vidal, M, Lev-Ari, S, Balaban, R, Leibou, S, Blumenfeld-Katzir, T, Ben-Eliezer, N, Peled, D, Assaf, Y, Jensen, D, Constantini, N, Dubnov-Raz, G, Halperin, I, Gepner, Y.
Age Differences in Recovery Rate Following an Aerobic-Based Exercise Protocol Inducing Muscle Damage Among Amateur, Male Athletes.
Front Physiol. 2022;13 :916924. doi: 10.3389/fphys.2022.916924.

Giannakopoulos, II, Guryev, GD, Serralles, JEC, Paska, J, Zhang, B, Daniel, L, White, JK, Collins, CM, Lattanzi, R.
A Hybrid volume-Surface Integral Equation Method for Rapid Electromagnetic Simulations in MRI.
IEEE Trans Biomed Eng. 2022;PP :. doi: 10.1109/TBME.2022.3186235.

Furman, G, Meerovich, V, Sokolovsky, V, Xia, Y, Salem, S, Shavit, T, Blumenfeld-Katzir, T, Ben-Eliezer, N.
Determining the internal orientation, degree of ordering, and volume of elongated nanocavities by NMR: Application to studies of plant stem.
J Magn Reson. 2022;341 :107258. doi: 10.1016/j.jmr.2022.107258.

Bnaiahu, N, Omer, N, Wilczynski, E, Levy, S, Blumenfeld-Katzir, T, Ben-Eliezer, N.
Correcting for imaging gradients-related bias of T₂ relaxation times at high-resolution MRI.
Magn Reson Med. 2022;88 (4):1806-1817. doi: 10.1002/mrm.29319.

Carluccio, G, Collins, CM.
High-permittivity pads to enhance SNR and transmit efficiency in MRI of the heart at 7T: a simulation study.
MAGMA. 2022;35 (6):903-909. doi: 10.1007/s10334-022-01018-2.

Maffei, C, Girard, G, Schilling, KG, Aydogan, DB, Adluru, N, Zhylka, A, Wu, Y, Mancini, M, Hamamci, A, Sarica, A, Teillac, A, Baete, SH, Karimi, D, Yeh, FC, Yildiz, ME, Gholipour, A, Bihan-Poudec, Y, Hiba, B, Quattrone, A, Quattrone, A, Boshkovski, T, Stikov, N, Yap, PT, de Luca, A, Pluim, J, Leemans, A, Prabhakaran, V, Bendlin, BB, Alexander, AL, Landman, BA, Canales-Rodríguez, EJ, Barakovic, M, Rafael-Patino, J, Yu, T, Rensonnet, G, Schiavi, S, Daducci, A, Pizzolato, M, Fischi-Gomez, E, Thiran, JP, Dai, G, Grisot, G, Lazovski, N, Puch, S, Ramos, M, Rodrigues, P, Prčkovska, V, Jones, R, Lehman, J, Haber, SN, Yendiki, A.
Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI.
Neuroimage. 2022;257 :119327. doi: 10.1016/j.neuroimage.2022.119327.

Bhatia, A, Lee, VK, Qian, Y, Paldino, MJ, Ceschin, R, Hect, J, Mountz, JM, Sun, D, Kohanbash, G, Pollack, IF, Jakacki, RI, Boada, F, Panigrahy, A.
Quantitative Sodium (²³Na) MRI in Pediatric Gliomas: Initial Experience.
Diagnostics (Basel). 2022;12 (5):. doi: 10.3390/diagnostics12051223.

Schramm, G, Holler, M.
Fast and memory-efficient reconstruction of sparse Poisson data in listmode with non-smooth priors with application to time-of-flight PET.
Phys Med Biol. 2022;67 (15):. doi: 10.1088/1361-6560/ac71f1.

Chung, S, Chen, J, Li, T, Wang, Y, Lui, YW.
Investigating Brain White Matter in Football Players with and without Concussion Using a Biophysical Model from Multishell Diffusion MRI.
AJNR Am J Neuroradiol. 2022;43 (6):823-828. doi: 10.3174/ajnr.A7522.

Sun, Z, Jiang, D, Liu, P, Muccio, M, Li, C, Cao, Y, Wisniewski, TM, Lu, H, Ge, Y.
Age-Related Tortuosity of Carotid and Vertebral Arteries: Quantitative Evaluation With MR Angiography.
Front Neurol. 2022;13 :858805. doi: 10.3389/fneur.2022.858805.

Coelho, S, Baete, SH, Lemberskiy, G, Ades-Aron, B, Barrol, G, Veraart, J, Novikov, DS, Fieremans, E.
Reproducibility of the Standard Model of diffusion in white matter on clinical MRI systems.
Neuroimage. 2022;257 :119290. doi: 10.1016/j.neuroimage.2022.119290.

Jelescu, IO, de Skowronski, A, Geffroy, F, Palombo, M, Novikov, DS.
Neurite Exchange Imaging (NEXI): A minimal model of diffusion in gray matter with inter-compartment water exchange.
Neuroimage. 2022;256 :119277. doi: 10.1016/j.neuroimage.2022.119277.

Lo Gullo, R, Sevilimedu, V, Baltzer, P, Le Bihan, D, Camps-Herrero, J, Clauser, P, Gilbert, FJ, Iima, M, Mann, RM, Partridge, SC, Patterson, A, Sigmund, EE, Thakur, S, Thibault, FE, Martincich, L, Pinker, K, EUSOBI International Breast Diffusion-Weighted Imaging working group.
A survey by the European Society of Breast Imaging on the implementation of breast diffusion-weighted imaging in clinical practice.
Eur Radiol. 2022;32 (10):6588-6597. doi: 10.1007/s00330-022-08833-0.

Makino, T, Jastrzębski, S, Oleszkiewicz, W, Chacko, C, Ehrenpreis, R, Samreen, N, Chhor, C, Kim, E, Lee, J, Pysarenko, K, Reig, B, Toth, H, Awal, D, Du, L, Kim, A, Park, J, Sodickson, DK, Heacock, L, Moy, L, Cho, K, Geras, KJ.
Differences between human and machine perception in medical diagnosis.
Sci Rep. 2022;12 (1):6877. doi: 10.1038/s41598-022-10526-z.

Moy, L, Kim, E.
Follow-up of COVID-19 Vaccine-related Axillary Lymphadenopathy before 12 Weeks Is Unnecessary.
Radiology. 2022;305 (1):54-55. doi: 10.1148/radiol.220962.

Fendrich, SJ, Koralnik, LR, Bonner, M, Goetz, D, Joe, P, Lee, J, Mueller, B, Robinson-Papp, J, Gonen, O, Clemente, JC, Malaspina, D.
Patient-reported exposures and outcomes link the gut-brain axis and inflammatory pathways to specific symptoms of severe mental illness.
Psychiatry Res. 2022;312 :114526. doi: 10.1016/j.psychres.2022.114526.

Block, KT.
Subtle pitfalls in the search for faster medical imaging.
Proc Natl Acad Sci U S A. 2022;119 (17):e2203040119. doi: 10.1073/pnas.2203040119.

Anania, V, Collier, Q, Veraart, J, Buikema, AE, Vanhevel, F, Billiet, T, Jeurissen, B, den Dekker, AJ, Sijbers, J.
Improved diffusion parameter estimation by incorporating T₂ relaxation properties into the DKI-FWE model.
Neuroimage. 2022;256 :119219. doi: 10.1016/j.neuroimage.2022.119219.